personal photo of Paul Gordon, PhD

Paul Gordon, PhD

Tagline:Bioinformatics Manager @ University of Calgary | CSM Centre for Health Genomics and Informatics

Calgary, AB, Canada

Work Experiences

Research Interests

  • Nanopore RNA/DNA signal analysis
  • Cancer genetic variant interpretation
  • Transcriptome and single-cell sequence analysis
  • Semantics and Biological Ontologies

Technical Skills

  • Proficient in C, C++, CUDA programming, Python, Java, Perl
  • Nanopore sequencing
  • Oligonucleotide design
  • Statistical analysis
  • Genomics and Transcriptomics analysis

Publications

  • CRYAB plays a role in terminating the presence of pro-inflammatory macrophages in the older, injured mouse peripheral nervous system

    Journal ArticlePublisher:Neurobiology of AgingDate:2024
    Authors:
    Kathleen Margaret HagenPaul GordonAriana FrederickAlexandra Louise PalmerPariya EdalatYohan Ricci ZontaLucas ScottMelissa FlanciaJacqueline Kelsey ReidMatthew Joelothers

  • Kupffer cell–like syncytia replenish resident macrophage function in the fibrotic liver

    Journal ArticlePublisher:ScienceDate:2023
    Authors:
    Moritz PeiselerBruna Araujo DavidJoel ZindelBas GJ SurewaardWoo-Yong LeeFelix HeymannYsbrand NusseFernanda VS CastanheiraRaymond ShimAdrien Guillotothers

  • Reconstructing SARS-CoV-2 infection dynamics through the phylogenetic inference of unsampled sources of infection

    Journal ArticlePublisher:Plos oneDate:2021
    Authors:
    Deshan PereraBen PerksMichael PotemkinAndy LiuPaul MK GordonM John GillQuan LongGuido Marle

  • Staphylococcus aureus ST59: concurrent but separate evolution of North American and East Asian lineages

    Journal ArticlePublisher:Frontiers in MicrobiologyDate:2021
    Authors:
    Jo-Ann McClureSahreena LakhundiAmani NiazyGeorge DongOsahon ObasuyiPaul GordonSidong ChenJohn M ConlyKunyan Zhang

  • Characterization of microglial transcriptomes in the brain and spinal cord of mice in early and late experimental autoimmune encephalomyelitis using a RiboTag strategy

    Journal ArticlePublisher:Scientific ReportsDate:2021
    Authors:
    Shaona AcharjeePaul MK GordonBenjamin H LeeJustin ReadMatthew L WorkentineKeith A SharkeyQuentin J Pittman

  • Evaluating the effectiveness of ensemble voting in improving the accuracy of consensus signals produced by various DTWA algorithms from step-current signals generated during nanopore sequencing

    Journal ArticlePublisher:PLoS Computational BiologyDate:2021
    Authors:
    Michael SmithRachel ChanMaaz KhurramPaul MK Gordon

  • Tissue-selective alternate promoters guide NLRP6 expression

    Journal ArticlePublisher:Life Science AllianceDate:2021
    Authors:
    Nathan A BraceyJaye M PlatnichArthur LauHyunjae ChungM Eric HyndmanJustin A MacDonaldJustin ChunPaul L BeckStephen E GirardinPaul MK Gordonothers

  • Oxford nanopore sequencing in clinical microbiology and infection diagnostics

    Journal ArticlePublisher:Briefings in BioinformaticsDate:2021
    Authors:
    Dropen ShekaNikolay AlabiPaul MK Gordon

  • Cystatin C plays a sex-dependent detrimental role in experimental autoimmune encephalomyelitis

    Journal ArticlePublisher:Cell reportsDate:2020
    Authors:
    Vahid HoghooghiAlexandra L PalmerAriana FrederickYulan JiangJessica E MerkensAnjali BalakrishnanTrisha M FinlayAnders GrubbEfrat LevyPaul Gordonothers

  • Hnrnpul1 loss of function affects skeletal and limb development

    Journal ArticlePublisher:bioRxivDate:2020
    Authors:
    Danielle L BlackwellSherri D FraserOana CaluseriuClaudia VivoriPaul MK GordonAmanda V TyndallRyan E LamontJillian S ParboosinghA Micheil InnesFrançois P Bernierothers